Hi all, I'm interested in uploading new data to the cell x gene covid19 atlas for the Shalek Lab and Ordovas-Montanes Lab Nasal Epithelia dataset. I have output an h5ad file here: https://urldefense.proofpoint.com/v2/url?u=https-3A__drive.google.com_drive_folders_1Wo8O6gcrf4oeWbPBWBKy-2Dc8I6Xnrgx8a-3Fusp-3Dsharing&d=DwIBaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=YCVDjNHxAgv8-gpjr0Xb48Y9Vk9U8oXzH6wskU6pf14&m=log-WoJSJs6Ib6y_2FmsCKHrxl1MaY2dSil5DB8fL0s&s=xq5dOsb8nSlCLtmWyVGfKa1aj3AKPTiG6s8ClMp8lXQ&e= . Please let me know how to proceed or if there are any errors in this current file Thanks! Carly On Wed, Feb 17, 2021 at 11:14 PM Carly Ziegler < Carly_Ziegler@hms.harvard.edu> wrote:
Hi Ni and COVID-19 Cell Atlas Team,
I hope you are doing well. I'm writing to request some guidance on updating our group's previous submission to the COVID-19 Cell Atlas Portal (current data and viewer is "Nasal Epithelia": https://urldefense.proofpoint.com/v2/url?u=https-3A__cellxgene.cziscience.com_e_b154c5cb-2Da4f2-2D43b3-2Da970-2D42e0c66cce79.cxg_&d=DwIBaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=YCVDjNHxAgv8-gpjr0Xb48Y9Vk9U8oXzH6wskU6pf14&m=log-WoJSJs6Ib6y_2FmsCKHrxl1MaY2dSil5DB8fL0s&s=P-zXRWuCtAAOREiGYgn0idY13W8rRmFy3kNB6MqsRkc&e= )
We just submitted our manuscript and are in the process of uploading this manuscript as a preprint to biorxiv. We would love to supply the data link for the expanded and updated object. How would you like us to proceed? I can provide an updated h5ad, though I had some difficulties in formatting this properly before (I generally work in R/Seurat).
Thanks in advance! Carly
-- Carly G. K. Ziegler Harvard/MIT MD-PhD Program Carly_Ziegler@hms.harvard.edu carly.ziegler@gmail.com 404-375-8912
-- Carly G. K. Ziegler Harvard/MIT MD-PhD Program Carly_Ziegler@hms.harvard.edu carly.ziegler@gmail.com 404-375-8912