Hi Max, Sorry but I am getting confused. What were you proposing in the first place? Adding datasets from that paper to our portal, or adding that paper in the list of publication, or something else? Best, Ni From: Maximilian Haeussler &lt;mhaeussl(a)ucsc.edu&gt; Date: Tuesday, 5 May 2020 at 15:47 To: Ni Huang &lt;nh3(a)sanger.ac.uk&gt;uk>, Matthew Speir &lt;mspeir(a)soe.ucsc.edu&gt; Cc: &quot;cv19caingest(a)sanger.ac.uk&quot; &lt;cv19caingest(a)sanger.ac.uk&gt; Subject: Re: [Cv19caingest] Fwd: cell paper vs covid19atlas [EXT] Hi Ni, great, thanks! Don't hesitate to let us know. Is there an email list with updates that we can subscribe to? On Tue, May 5, 2020 at 4:42 PM Ni Huang <nh3@sanger.ac.uk<mailto:nh3@sanger.ac.uk>> wrote: Hi Max, We are aware of this paper. There could be overlapping of datasets, but I can’t be sure until its supplementary tables (particularly table S9) become available online. Best, Ni From: Cv19caingest <cv19caingest-bounces@sanger.ac.uk<mailto:cv19caingest-bounces@sanger.ac.uk>> on behalf of Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Date: Tuesday, 5 May 2020 at 15:18 To: "cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk>" <cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk>> Subject: [Cv19caingest] Fwd: cell paper vs covid19atlas [EXT] ---------- Forwarded message --------- From: Vladimir Kiselev <vk6@sanger.ac.uk<mailto:vk6@sanger.ac.uk>> Date: Tue, May 5, 2020 at 4:16 PM Subject: Re: cell paper vs covid19atlas [EXT] To: Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Hi Max, Could you please send this question to cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk> ? There is a data scientist there who will be able to answer your questions. Cheers, Vlad -- Vladimir Kiselev CellGen Informatics<http://www.sanger.ac.uk/science/groups/cellular-genetics-informatics> Team Leader Wellcome Sanger Institute Wellcome Genome Campus Hinxton, Cambridge, CB10 1SA Phone: +44 (0) 1223 496850 Message: Mattermost<https://mattermost.sanger.ac.uk/cellgeninf> or Slack [cellgeni.slack.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A_… Web: https://genat.uk [genat.uk]<https://urldefense.proofpoint.com/v2/url?u=https-3A__genat.uk&… [cid:image001.png@01D3BF73.275DCF80]<http://www.sanger.ac.uk/> From: Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Date: Tuesday, 5 May 2020 at 15:09 To: Vladimir Kiselev <vk6@sanger.ac.uk<mailto:vk6@sanger.ac.uk>> Subject: cell paper vs covid19atlas [EXT] Hi Vlad, is this paper in some way related to your datasets? https://www.sciencedirect.com/science/article/pii/S0092867420305006 [sciencedirect.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__… Is there some overlap in the datasets that you use? If yes, could highlight that on your webpage... best Max -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

Ah thank you Max for the kind support! Actually as part of the HCA lung biological network, we and the authors of that paper had shared each other’s manuscript before submission. Admittedly I haven’t read their manuscript closely with respect to which datasets they actually used. My impression was that they generated quite a big chunk of their own data and used perhaps only one or two lung datasets. We will keep you updated once their extra datasets are added. Best, Ni From: Maximilian Haeussler &lt;mhaeussl(a)ucsc.edu&gt; Date: Tuesday, 5 May 2020 at 16:28 To: Ni Huang &lt;nh3(a)sanger.ac.uk&gt; Cc: Matthew Speir &lt;mspeir(a)soe.ucsc.edu&gt;du>, &quot;cv19caingest(a)sanger.ac.uk&quot; &lt;cv19caingest(a)sanger.ac.uk&gt; Subject: Re: [Cv19caingest] Fwd: cell paper vs covid19atlas [EXT] My main idea was to highlight that your datasets are also used in another paper, to demonstrate the impact of your website. And yes, at some point, maybe also adding the datasets from that other paper but that will take longer. On Tue, May 5, 2020 at 5:26 PM Ni Huang <nh3@sanger.ac.uk<mailto:nh3@sanger.ac.uk>> wrote: Hi Max, Sorry but I am getting confused. What were you proposing in the first place? Adding datasets from that paper to our portal, or adding that paper in the list of publication, or something else? Best, Ni From: Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Date: Tuesday, 5 May 2020 at 15:47 To: Ni Huang <nh3@sanger.ac.uk<mailto:nh3@sanger.ac.uk>>, Matthew Speir <mspeir@soe.ucsc.edu<mailto:mspeir@soe.ucsc.edu>> Cc: "cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk>" <cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk>> Subject: Re: [Cv19caingest] Fwd: cell paper vs covid19atlas [EXT] Hi Ni, great, thanks! Don't hesitate to let us know. Is there an email list with updates that we can subscribe to? On Tue, May 5, 2020 at 4:42 PM Ni Huang <nh3@sanger.ac.uk<mailto:nh3@sanger.ac.uk>> wrote: Hi Max, We are aware of this paper. There could be overlapping of datasets, but I can’t be sure until its supplementary tables (particularly table S9) become available online. Best, Ni From: Cv19caingest <cv19caingest-bounces@sanger.ac.uk<mailto:cv19caingest-bounces@sanger.ac.uk>> on behalf of Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Date: Tuesday, 5 May 2020 at 15:18 To: "cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk>" <cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk>> Subject: [Cv19caingest] Fwd: cell paper vs covid19atlas [EXT] ---------- Forwarded message --------- From: Vladimir Kiselev <vk6@sanger.ac.uk<mailto:vk6@sanger.ac.uk>> Date: Tue, May 5, 2020 at 4:16 PM Subject: Re: cell paper vs covid19atlas [EXT] To: Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Hi Max, Could you please send this question to cv19caingest@sanger.ac.uk<mailto:cv19caingest@sanger.ac.uk> ? There is a data scientist there who will be able to answer your questions. Cheers, Vlad -- Vladimir Kiselev CellGen Informatics<http://www.sanger.ac.uk/science/groups/cellular-genetics-informatics> Team Leader Wellcome Sanger Institute Wellcome Genome Campus Hinxton, Cambridge, CB10 1SA Phone: +44 (0) 1223 496850 Message: Mattermost<https://mattermost.sanger.ac.uk/cellgeninf> or Slack [cellgeni.slack.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A_… Web: https://genat.uk [genat.uk]<https://urldefense.proofpoint.com/v2/url?u=https-3A__genat.uk&… [cid:image001.png@01D3BF73.275DCF80]<http://www.sanger.ac.uk/> From: Maximilian Haeussler <mhaeussl@ucsc.edu<mailto:mhaeussl@ucsc.edu>> Date: Tuesday, 5 May 2020 at 15:09 To: Vladimir Kiselev <vk6@sanger.ac.uk<mailto:vk6@sanger.ac.uk>> Subject: cell paper vs covid19atlas [EXT] Hi Vlad, is this paper in some way related to your datasets? https://www.sciencedirect.com/science/article/pii/S0092867420305006 [sciencedirect.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__… Is there some overlap in the datasets that you use? If yes, could highlight that on your webpage... best Max -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.