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February 2023

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Human Cell Atlas Newsletter - February 2023 [EXT]
by HCA Executive Offices 17 Feb '23

17 Feb '23

Welcome to the thirteenth Human Cell Atlas newsletter https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Issue 13: February 2023 ------------------------------------------------------------ https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… Dear HCA Members, Welcome to the 13th Human Cell Atlas newsletter. Five years after the first HCA White Paper, our international consortium has grown to include 18 Biological Networks and more than 2,600 HCA members from 86 countries. Having sequenced and characterized more than 100 million cells so far, progress from our open global community is accelerating towards the creation of the Human Cell Atlas 1.0 and is expanding the focus on cell annotation and integration. We all contribute to the HCA community in different ways to help create the Atlas, including contributing data to the HCA, developing methods or technology, attending HCA meetings, and submitting papers for inclusion on the HCA Publications webpage. Everyone’s input is important and we thank you for all your contributions. We hope you will enjoy this newsletter highlighting the great collaborative spirit, fantastic open community, and wonderful science that we do together. Best regards The Human Cell Atlas Team Table of Contents * 2023 HCA General Meeting * New Members of the HCA Organising Committee * HCA Publications: Paper Approval Procedure * HCA Asia 2022 Meeting * HCA Developmental and Pediatric Cell Atlas Meeting * Africa Computational and Experimental Design Training Workshops * HCA Virtual Townhalls * HCA Bionetworks Seminar on Atlas Integration and Cell Annotation * Scholars at Risk * HCA Social Media * New Member of HCA Executive Office * Upcoming Events * Useful Contacts https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** 2023 HCA General Meeting ------------------------------------------------------------ The 2023 Human Cell Atlas General Meeting will be held on 10-12 July, 2023, in Toronto, Canada, at the MaRS Centre. The GM will focus on integration and continuing progress towards building the first draft of the Human Cell Atlas, including connecting and leveraging diverse communities, reference maps, data assembly and computational efforts. The meeting will also explore machine learning approaches in Atlas construction. More details to follow at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** New Members of the HCA Organising Committee ------------------------------------------------------------ The HCA Organising Committee (OC), the multinational governing body of the HCA, is delighted to announce (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) that Christine Wells, Christoph Bock, Fabian Theis, Fabiana Arzuaga, Patricia Severino and Shyam Prabhakar have joined the committee. Co-chaired by Sarah Teichmann and Aviv Regev, the HCA Organising Committee (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) now has 36 members from around the world. Meeting regularly to set policies for HCA, the OC coordinates the activities of the HCA Biological Networks and Working Groups, and determines the overall scientific direction of the HCA. ** HCA Publications: Paper Approval Procedure ------------------------------------------------------------ Do you have an upcoming paper or preprint that you would like included as an HCA publication (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ? To help it get more visibility, please submit it to the HCA Publication Committee for review as an HCA publication using this form (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Full details are available here (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . To date, 120 papers have been approved by the HCA Publications Committee. ** HCA Asia 2022 Meeting ------------------------------------------------------------ The Human Cell Atlas Asia 2022 Meeting was held on 3-4 November 2022, in Bangkok, Thailand and online. This meeting featured many collaborations in the Asia-Pacific region as well as pitches for new flagship projects, and included 194 in-person and 133 virtual participants, from 18 countries. You can see recordings on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and HCA Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) sites. ** HCA Developmental and Pediatric Cell Atlas Meeting ------------------------------------------------------------ Held in Paris, France on 20-22 November, 2022, the HCA Developmental and Pediatric meeting brought together more than 200 people (in person and virtually) from 29 countries. Many thanks to our supporters Inserm (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , the Chan Zuckerberg Initiative (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , The Company of Biologists (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , and EpiGene3Sys, a CNRS (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) International Research Network. Recordings are available on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and HCA Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** Africa Computational and Experimental Design Training Workshops ------------------------------------------------------------ Thanks to the support of the Chan Zuckerberg Initiative (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , HCA is hosting a week-long in-person Computational and Experimental Design Workshop in Accra, Ghana, 7-10 March, 2023 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . This workshop will bring together 40 computational biologists and researchers from 12 countries in Africa. Due to great demand, we are planning a similar program in June 2023 at Redeemers University in Nigeria. More information to follow. https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** HCA Virtual Townhalls ------------------------------------------------------------ The HCA Townhall on 6 December, 2022 focused on HCA updates and plans for 2023, including atlas integration and cell annotation. See recordings on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Don’t miss the next HCA Townhall on 27 April, 2023. ** HCA Bionetworks Seminar on Atlas Integration and Cell Annotation ------------------------------------------------------------ The HCA seminar on February 9^th gave updates on Atlas Integration and the HCA Cell Annotation Platform (CAP). You can see the recording on YouTube https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… [youtube.com] (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… . The Cell Annotation Platform (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (CAP) is a community-driven resource and data repository, designed to enable standardized cell nomenclature. CAP is currently being populated for researchers to compare cell annotations across studies to help achieve consensus cell annotations for the Human Cell Atlas. An API will soon be released for users to query cell annotations in a standardized way for downstream access. For a demonstration video of CAP please see https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… or https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Please contact Evan Biederstedt (evan_biederstedt(a)hms.harvard.edu (mailto:evan_biederstedt@hms.harvard.edu) ) and Chloé Villani (cvillani(a)broadinstitute.org (mailto:cvillani@broadinstitute.org) ) for further information on CAP. https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Scholars at Risk ------------------------------------------------------------ Are you interested in hosting an at-risk academic scholar who is facing threats to their lives, liberty, and well-being? HCA is an affiliate member of the Scholars at Risk non-governmental organization, and you can indicate your potential interest here (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** HCA Social Media ------------------------------------------------------------ To engage with the HCA community you can join more than 2400 HCA members on the Human Cell Atlas Slack channel (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . You can also visit and follow us on HCA LinkedIn (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** New Member of HCA Executive Office ------------------------------------------------------------ HCA Senior Programme Manager - Lucia Robson We are delighted to introduce Lucia Robson, who has just joined the HCA Executive Office as HCA Senior Programme Manager. Based in the UK office, Lucia will provide leadership and senior-level programme management coordination for the Human Cell Atlas, including a focus on coordination of Atlas Integration. Previously at the World Health Organisation (WHO) headquarters, Lucia combines a keen interest in genomics with experience designing and executing complex global initiatives that aim to improve human health. ** Upcoming Events ------------------------------------------------------------ * 7-10 March 2023 + HCA Africa 2023 Computational and Experimental Design Workshop, University of Ghana (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) * 27 April 2023 + HCA-wide Town Hall meeting (virtual) * 10-12 July 2023 + Human Cell Atlas General Meeting, Toronto, Canada (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (hybrid) HCA events are open to all, so please feel free to share this information with anyone in your community that may be interested in attending. Further details about HCA events are available here (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . We hope you will find the content informative and useful. If you have any suggestions or comments for the newsletter, please send them to newsletter(a)humancellatlas.org (mailto:newsletter@humancellatlas.org?subject=Suggestion%20for%20the%20HCA%20Newsletter) ** Useful Contacts ------------------------------------------------------------ General Enquires - hca(a)humancellatlas.org (mailto:hca@humancellatlas.org) Meeting Enquiry - meetings(a)humancellatlas.org (mailto:meetings@humancellatlas.org) or asia-meetings(a)humancellatlas.org (mailto:asia-meetings@humancellatlas.org) Ethics Help Desk - ethics-help(a)humancellatlas.org (mailto:ethics-help@humancellatlas.org) DCP Help Desk - data-help(a)humancellatlas.org (mailto:data-help@humancellatlas.org) HCA Executive Office Team - team(a)humancellatlas.org (mailto:team@humancellatlas.org) ============================================================ ** Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** LinkedIn (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Website (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) This email was sent to oral-network(a)humancellatlas.org (mailto:oral-network@humancellatlas.org) why did I get this? (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) unsubscribe from this list (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) update subscription preferences (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Human Cell Atlas . The Sanger Centre . Wellcome Trust Genome Campus . SAFFRON WALDEN, Essex CB10 1SA . United Kingdom

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Live Seminar: Ultra High-Plex 6K RNA Single Cell Imaging [EXT]
by Byrd, Kevin 10 Feb '23

10 Feb '23

Hi OCBN Team, We are going to host Amy Wahba from Nanostring on March 10th at 10 am EST to discuss their Ultra High-Plex 6K RNA Single Cell Imaging announcement at AGBT this past week. More on the announcement can be viewed here: https://urldefense.proofpoint.com/v2/url?u=https-3A__investors.nanostring.c… She will go over the technology with us and answer questions for our group. We will live-stream the discussion to allow for interaction throughout. You're all welcome to come. Link below: ________________________________________________________________________________ Microsoft Teams meeting Join on your computer, mobile app or room device Click here to join the meeting<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_l_… > Meeting ID: 290 069 186 939 Passcode: atUJdT Download Teams<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_en-2… > | Join on the web<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_micr… > Learn More<https://urldefense.proofpoint.com/v2/url?u=https-3A__aka.ms_JoinTeamsMeetin… > | Meeting options<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_me… > ________________________________________________________________________________ Best, KMB

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