- Oral-network - public-lists.sanger.ac.uk

Live Seminar: Highly-multiplexed, High-resolution In Situ Assays using the MERSCOPE Platform with Vizgen (Friday June 2, 2023 10am - 12pm EST) [EXT]

by Byrd, Kevin

Hi OCBN Team, We are looking to discussing the capabilities of the MERSCOPE platform with the Vizgen team and the Oral & Craniofacial Bionetwork on June 2 at 10am EST. We invite you to join us virtually to learn more about the assay if you have time and interst. All lab members are welcome. Field Applications Scientist Clare Sengupta will present a 40-minute session, followed by a 20-minute Q&A segment related to their highly-multiplexed, high-resolution in situ assays using the MERSCOPE Platform Clare has extensive experience in the field and is well-versed in MERSCOPE applications. She will have time to address any questions you may have during and after the presentation. Best, KMB ________________________________________________________________________________ Microsoft Teams meeting Join on your computer, mobile app or room device Click here to join the meeting<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_l_… > Meeting ID: 237 535 918 928 Passcode: JbSPfd Download Teams<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_en-2… > | Join on the web<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_micr… > Learn More<https://urldefense.proofpoint.com/v2/url?u=https-3A__aka.ms_JoinTeamsMeetin… > | Meeting options<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_me… > ________________________________________________________________________________

11 months, 2 weeks

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Live Seminar: Spatial Biology High Parameter Multiplexing with Akoya Biosciences Wed May 10, 2023 10am - 12pm (EST) [EXT]

by Byrd, Kevin

Hi OCBN Team, We are going to host Clemens Duerrschmid, Ph.D., Sr. Technical Application Scientist from Akoya Biosciences on May 10th at 10 am EST (in-person and online) to discuss advances to their Spatial Biology High Parameter Multiplexing announcements at AGBT this year. He will go over the technology with us and answer questions for our group. We will live-stream the discussion to allow for interaction throughout. Learning Objectives: Learn how to analyze 100+ biomarkers from any sample type, enabling rapid whole slide, single-cell spatial biology | Get a preview into performing multiomic spatial phenotyping, detecting RNA and protein on one simple platform | See how you can analyze 5 to 100+ slides per week on the same system with PhenoCycler and Opal workflows. You're all welcome to come. Teams link is attached. Best, KMB ________________________________________________________________________________ Microsoft Teams meeting Join on your computer, mobile app or room device Click here to join the meeting<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_l_… > Meeting ID: 232 659 179 644 Passcode: oBNPzF Download Teams<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_en-2… > | Join on the web<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_micr… > Learn More<https://urldefense.proofpoint.com/v2/url?u=https-3A__aka.ms_JoinTeamsMeetin… > | Meeting options<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_me… > ________________________________________________________________________________

1 year

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Human Cell Atlas Newsletter - February 2023 [EXT]

by HCA Executive Offices

Welcome to the thirteenth Human Cell Atlas newsletter https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Issue 13: February 2023 ------------------------------------------------------------ https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… Dear HCA Members, Welcome to the 13th Human Cell Atlas newsletter. Five years after the first HCA White Paper, our international consortium has grown to include 18 Biological Networks and more than 2,600 HCA members from 86 countries. Having sequenced and characterized more than 100 million cells so far, progress from our open global community is accelerating towards the creation of the Human Cell Atlas 1.0 and is expanding the focus on cell annotation and integration. We all contribute to the HCA community in different ways to help create the Atlas, including contributing data to the HCA, developing methods or technology, attending HCA meetings, and submitting papers for inclusion on the HCA Publications webpage. Everyone’s input is important and we thank you for all your contributions. We hope you will enjoy this newsletter highlighting the great collaborative spirit, fantastic open community, and wonderful science that we do together. Best regards The Human Cell Atlas Team Table of Contents * 2023 HCA General Meeting * New Members of the HCA Organising Committee * HCA Publications: Paper Approval Procedure * HCA Asia 2022 Meeting * HCA Developmental and Pediatric Cell Atlas Meeting * Africa Computational and Experimental Design Training Workshops * HCA Virtual Townhalls * HCA Bionetworks Seminar on Atlas Integration and Cell Annotation * Scholars at Risk * HCA Social Media * New Member of HCA Executive Office * Upcoming Events * Useful Contacts https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** 2023 HCA General Meeting ------------------------------------------------------------ The 2023 Human Cell Atlas General Meeting will be held on 10-12 July, 2023, in Toronto, Canada, at the MaRS Centre. The GM will focus on integration and continuing progress towards building the first draft of the Human Cell Atlas, including connecting and leveraging diverse communities, reference maps, data assembly and computational efforts. The meeting will also explore machine learning approaches in Atlas construction. More details to follow at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** New Members of the HCA Organising Committee ------------------------------------------------------------ The HCA Organising Committee (OC), the multinational governing body of the HCA, is delighted to announce (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) that Christine Wells, Christoph Bock, Fabian Theis, Fabiana Arzuaga, Patricia Severino and Shyam Prabhakar have joined the committee. Co-chaired by Sarah Teichmann and Aviv Regev, the HCA Organising Committee (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) now has 36 members from around the world. Meeting regularly to set policies for HCA, the OC coordinates the activities of the HCA Biological Networks and Working Groups, and determines the overall scientific direction of the HCA. ** HCA Publications: Paper Approval Procedure ------------------------------------------------------------ Do you have an upcoming paper or preprint that you would like included as an HCA publication (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ? To help it get more visibility, please submit it to the HCA Publication Committee for review as an HCA publication using this form (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Full details are available here (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . To date, 120 papers have been approved by the HCA Publications Committee. ** HCA Asia 2022 Meeting ------------------------------------------------------------ The Human Cell Atlas Asia 2022 Meeting was held on 3-4 November 2022, in Bangkok, Thailand and online. This meeting featured many collaborations in the Asia-Pacific region as well as pitches for new flagship projects, and included 194 in-person and 133 virtual participants, from 18 countries. You can see recordings on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and HCA Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) sites. ** HCA Developmental and Pediatric Cell Atlas Meeting ------------------------------------------------------------ Held in Paris, France on 20-22 November, 2022, the HCA Developmental and Pediatric meeting brought together more than 200 people (in person and virtually) from 29 countries. Many thanks to our supporters Inserm (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , the Chan Zuckerberg Initiative (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , The Company of Biologists (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , and EpiGene3Sys, a CNRS (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) International Research Network. Recordings are available on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and HCA Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** Africa Computational and Experimental Design Training Workshops ------------------------------------------------------------ Thanks to the support of the Chan Zuckerberg Initiative (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , HCA is hosting a week-long in-person Computational and Experimental Design Workshop in Accra, Ghana, 7-10 March, 2023 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . This workshop will bring together 40 computational biologists and researchers from 12 countries in Africa. Due to great demand, we are planning a similar program in June 2023 at Redeemers University in Nigeria. More information to follow. https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** HCA Virtual Townhalls ------------------------------------------------------------ The HCA Townhall on 6 December, 2022 focused on HCA updates and plans for 2023, including atlas integration and cell annotation. See recordings on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Don’t miss the next HCA Townhall on 27 April, 2023. ** HCA Bionetworks Seminar on Atlas Integration and Cell Annotation ------------------------------------------------------------ The HCA seminar on February 9^th gave updates on Atlas Integration and the HCA Cell Annotation Platform (CAP). You can see the recording on YouTube https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… [youtube.com] (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… . The Cell Annotation Platform (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (CAP) is a community-driven resource and data repository, designed to enable standardized cell nomenclature. CAP is currently being populated for researchers to compare cell annotations across studies to help achieve consensus cell annotations for the Human Cell Atlas. An API will soon be released for users to query cell annotations in a standardized way for downstream access. For a demonstration video of CAP please see https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… or https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Please contact Evan Biederstedt (evan_biederstedt(a)hms.harvard.edu (mailto:evan_biederstedt@hms.harvard.edu) ) and Chloé Villani (cvillani(a)broadinstitute.org (mailto:cvillani@broadinstitute.org) ) for further information on CAP. https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Scholars at Risk ------------------------------------------------------------ Are you interested in hosting an at-risk academic scholar who is facing threats to their lives, liberty, and well-being? HCA is an affiliate member of the Scholars at Risk non-governmental organization, and you can indicate your potential interest here (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** HCA Social Media ------------------------------------------------------------ To engage with the HCA community you can join more than 2400 HCA members on the Human Cell Atlas Slack channel (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . You can also visit and follow us on HCA LinkedIn (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** New Member of HCA Executive Office ------------------------------------------------------------ HCA Senior Programme Manager - Lucia Robson We are delighted to introduce Lucia Robson, who has just joined the HCA Executive Office as HCA Senior Programme Manager. Based in the UK office, Lucia will provide leadership and senior-level programme management coordination for the Human Cell Atlas, including a focus on coordination of Atlas Integration. Previously at the World Health Organisation (WHO) headquarters, Lucia combines a keen interest in genomics with experience designing and executing complex global initiatives that aim to improve human health. ** Upcoming Events ------------------------------------------------------------ * 7-10 March 2023 + HCA Africa 2023 Computational and Experimental Design Workshop, University of Ghana (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) * 27 April 2023 + HCA-wide Town Hall meeting (virtual) * 10-12 July 2023 + Human Cell Atlas General Meeting, Toronto, Canada (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (hybrid) HCA events are open to all, so please feel free to share this information with anyone in your community that may be interested in attending. Further details about HCA events are available here (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . We hope you will find the content informative and useful. If you have any suggestions or comments for the newsletter, please send them to newsletter(a)humancellatlas.org (mailto:newsletter@humancellatlas.org?subject=Suggestion%20for%20the%20HCA%20Newsletter) ** Useful Contacts ------------------------------------------------------------ General Enquires - hca(a)humancellatlas.org (mailto:hca@humancellatlas.org) Meeting Enquiry - meetings(a)humancellatlas.org (mailto:meetings@humancellatlas.org) or asia-meetings(a)humancellatlas.org (mailto:asia-meetings@humancellatlas.org) Ethics Help Desk - ethics-help(a)humancellatlas.org (mailto:ethics-help@humancellatlas.org) DCP Help Desk - data-help(a)humancellatlas.org (mailto:data-help@humancellatlas.org) HCA Executive Office Team - team(a)humancellatlas.org (mailto:team@humancellatlas.org) ============================================================ ** Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** LinkedIn (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Website (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) This email was sent to oral-network(a)humancellatlas.org (mailto:oral-network@humancellatlas.org) why did I get this? (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) unsubscribe from this list (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) update subscription preferences (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Human Cell Atlas . The Sanger Centre . Wellcome Trust Genome Campus . SAFFRON WALDEN, Essex CB10 1SA . United Kingdom

1 year, 2 months

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Live Seminar: Ultra High-Plex 6K RNA Single Cell Imaging [EXT]

by Byrd, Kevin

Hi OCBN Team, We are going to host Amy Wahba from Nanostring on March 10th at 10 am EST to discuss their Ultra High-Plex 6K RNA Single Cell Imaging announcement at AGBT this past week. More on the announcement can be viewed here: https://urldefense.proofpoint.com/v2/url?u=https-3A__investors.nanostring.c… She will go over the technology with us and answer questions for our group. We will live-stream the discussion to allow for interaction throughout. You're all welcome to come. Link below: ________________________________________________________________________________ Microsoft Teams meeting Join on your computer, mobile app or room device Click here to join the meeting<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_l_… > Meeting ID: 290 069 186 939 Passcode: atUJdT Download Teams<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_en-2… > | Join on the web<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.microsoft.com_micr… > Learn More<https://urldefense.proofpoint.com/v2/url?u=https-3A__aka.ms_JoinTeamsMeetin… > | Meeting options<https://urldefense.proofpoint.com/v2/url?u=https-3A__teams.microsoft.com_me… > ________________________________________________________________________________ Best, KMB

1 year, 2 months

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Fw: HCA Town Hall Dec 6th: Please spread the word [EXT]

by Byrd, Kevin Matthew

Hi All, The HCA is inviting members of all the Bionetworks to an HCA-wide interactive Town Hall next Tuesday, December 6th. Within our Oral & Craniofacial Bionetwork labs, please forward this invitation to anyone who might be interested. Everyone is welcome; the registration link is below. Best, Kevin and Ines [https://urldefense.proofpoint.com/v2/url?u=https-3A__s3.amazonaws.com_bizza… ] HCA Town Hall Tuesday 06 December 2022 11:00-12:00 EDT | 16:00 -17:00 GMT Join us for the HCA-wide Town Hall meeting on December 6, 11am-12pm EST/4pm-5pm GMT to hear HCA updates and plans for 2023. The online meeting will include Atlas Integration and Cell Annotation updates, and audience Q&A with the panel. You can register here<https://urldefense.proofpoint.com/v2/url?u=https-3A__u25091498.ct.sendgrid.… >. We hope you can join us. [bell icon] Add to calendar Google <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.google.com_calenda… > / iCal <https://urldefense.proofpoint.com/v2/url?u=https-3A__events.bizzabo.com_dow… > / Outlook <https://urldefense.proofpoint.com/v2/url?u=https-3A__events.bizzabo.com_dow… > / Yahoo<https://urldefense.proofpoint.com/v2/url?u=https-3A__calendar.yahoo.com_-3F… > [Event image] Bizzabo Inc. 31W 27th St, New York, NY 10001 Copyright © 2017 Bizzabo, All rights reserved. For questions or feedback, please contact the organizer<mailto:meetings@humancellatlas.org>. Unsubscribe<https://urldefense.proofpoint.com/v2/url?u=https-3A__u25091498.ct.sendgrid.… > in order to stop receiving emails from this organizer.

1 year, 4 months

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Human Cell Atlas Newsletter - October 2022 [EXT]

by HCA Executive Offices

Welcome to the twelfth Human Cell Atlas newsletter https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Issue 12: October 2022 ------------------------------------------------------------ https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… Dear HCA Members, Welcome to the 12^th Human Cell Atlas newsletter. In June, we were enormously pleased to meet face-to-face for the first hybrid General Meeting in three years; it was wonderful to get the community together in Vienna and online. In addition to seeing old friends and forging new collaborations, the meeting drove forward the creation of roadmaps for the Bionetworks which are helping to map a path towards the first draft of the HCA. We hope you will enjoy this newsletter which highlights the great community spirit, events and news from HCA members. The Human Cell Atlas Team Table of Contents * HCA community reconvenes at the 2022 General Meeting * The HCA Latin America network holds second Symposium * HCA Website Updates * New information from the Ethics Working Group * HCA Social Media * HCA Data Coordination Platform * Third European Commission H2020 - HCA Cluster Newsletter * HCA Africa Computational Workshops (virtual) * HCA Asia Meeting, Bangkok, 3 - 4 November, 2022 (hybrid) * HCA Developmental and Pediatric Cell Atlas Meeting, 20 - 22 November, 2022 (hybrid) * Scholars at Risk * HCA Townhall events * New Member of the HCA Executive Office * All Upcoming Events * Useful Contacts https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** ------------------------------------------------------------ ** HCA community reconvenes at the 2022 General Meeting ------------------------------------------------------------ The Human Cell Atlas community came together for a wonderful three days at the hybrid annual HCA General Meeting in June held in Vienna, Austria and online. The meeting focused on progress to date, the bionetworks and preparing for atlas integration. Attendees from 53 countries included 221 in-person and 654 virtual participants. You can see recordings of the 2022 HCA General Meeting on our Youtube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) sites. ** The HCA Latin America network holds second Symposium ------------------------------------------------------------ The Human Cell Atlas Latin America Symposium was held virtually on 6-7 October 2022. It brought together Latin American scientists and researchers worldwide to discuss and share research on single-cell technologies and expand the network. About 170 participants from 22 countries joined the talks and discussion rooms. Videos will be available soon on HCA YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** HCA Website Updates ------------------------------------------------------------ We have added a new Search feature to the HCA website, and are continuing to add and update webpages including the HCA legal entities (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and HCA research on COVID-19 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) pages. https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** New information from the Ethics Working Group ------------------------------------------------------------ Ethics toolkits are available at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… . Please check out the recent additions, including: * Pediatrics Consent templates. + Main parental/mature minor consent form (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) + Assent and information form (7-11 years old) (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) + Consent form for use of pediatric leftover clinical tissue (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) + Consent form for pediatric rare disease research (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) + Consent for research use of newborn blood spots (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) * Ethics and Data Governance document (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) - An overview of HCA and its ethical governance in simple terms, offering useful background documents. * Material and Data Transfer Agreement template (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) * Additional reading – Pediatrics: Thematic background ‘primers’ have been developed to explore issues on Children’s right to Health (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (Robyn McDougall, Dimitri Patrinos) and Children’s Data Protection (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (Michael J.S. Beauvais). ** HCA Social Media ------------------------------------------------------------ HCA is now on LinkedIn! Please visit and follow the new HCA LinkedIn (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) page. You can also follow HCA on Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) , Youtube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Join the 2285 HCA members on the Human Cell Atlas Slack channel (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) to engage with the HCA community, including a #Jobs channel. ** HCA Data Coordination Platform ------------------------------------------------------------ The Data Coordination Platform (DCP) team is collaborating with atlas builders from the different HCA Biological Networks to bring all the raw data and matrices together into the Data Portal. Please help the HCA community build an atlas by contacting the DCP wrangler team (mailto:wrangler-team@data.humancellatlas.org) and submitting your data. This can include raw sequencing data, CELLxGENE matrices and cell type annotation. Matrices produced from managed-access datasets are also encouraged. The wrangler team (mailto:wrangler-team@data.humancellatlas.org) can also help format and standardize metadata and make matrices accessible from other portals like CELLxGENE and UCSC Cell Browser. To date, the Data Coordination Platform (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (DCP) hosts data from an estimated 30.6 million cells. Since May 2022, the DCP has added 4.3 million cells (30.6 million total), 27 projects (288 total), 1,200 donors (4,500 total), and 1,900 samples (13,300 total). Join the #dcp-users (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) slack channel to learn about the latest data in the Data Portal and connect with other data users. ** Third European Commission H2020 - HCA Cluster Newsletter ------------------------------------------------------------ Read the third and final newsletter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) about six HCA pilot actions (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) that were funded by the European Commission Horizon 2020 Research and Innovation Framework Programme (H2020). ** HCA Africa Computational Workshops (virtual) ------------------------------------------------------------ HCA is hosting virtual workshops to introduce Single-Cell RNA-Seq Analysis tools and techniques to researchers based in Africa, thanks to support by the Chan Zuckerberg Initiative. The first HCA Africa Workshop took place on 17 – 20 October. Due to great demand, the Workshop will be re-run on 14 – 17 November 2022. Both workshops are fully booked with 160 people participating from 16 African countries. Additional workshops are being planned in Africa and elsewhere. ** HCA Asia Meeting, Bangkok, 3 - 4 November, 2022 (hybrid) ------------------------------------------------------------ The hybrid HCA Asia Meeting 2022 will be held on 3 - 4 November, in-person in Bangkok, Thailand and online. The meeting will bring researchers together to share updates and insights, to broaden representation of communities across the Asia-Pacific region, and to enhance scientific impact in the region and across the globe. Register for the HCA Asia meeting at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** HCA Developmental and Pediatric Cell Atlas Meeting, 20 - 22 November, 2022 (hybrid) ------------------------------------------------------------ The second HCA Developmental and Pediatric Cell Atlas Meeting will take place on 20 – 22 November in Paris, France and online. Bringing together the Developmental and Pediatric Cell Atlas community, the meeting will share updates and insights on implementing the proposed strategies outlined in the HCA Developmental roadmap (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . Please register at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Scholars at Risk ------------------------------------------------------------ The Human Cell Atlas consortium is an Affiliate Member of Scholars at Risk, a US-based non-governmental organization that protects scholars facing grave threats to their lives, liberty, and well-being, in part by arranging short-term (typically one-year) positions of sanctuary at institutions in its network. HCA members who are potentially interested in hosting an at-risk scholar can register their interest at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . No commitment is necessary to join the registry. ** HCA Townhall events ------------------------------------------------------------ Join us for the virtual HCA Townhall events organised for 6 December 2022 and 26 April 2023, where we will be celebrating our progress to date and discuss plans for building Atlas 1.0. Everyone welcome! ** New Member of the HCA Executive Office ------------------------------------------------------------ ** HCA Archivist - Ayah Al-Rawni ------------------------------------------------------------ Ayah has joined the HCA administrative team in the UK as Archivist. She will capture and preserve materials about HCA’s history, collaborative research activities and scientific achievements, to ensure that they are accessible and usable in the future. The archive will be a valuable information resource. Ayah is also working on implementing HCA information governance policies. To contact Ayah about the Archive, email archive(a)humancellatlas.org (mailto:archive@humancellatlas.org) ** All Upcoming Events ------------------------------------------------------------ * 17-20 October 2022 + HCA Africa Single-Cell RNA-Seq Analysis tools and techniques Workshop * 03-04 November 2022 + HCA Asia 2022 Meeting (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Bangkok, Thailand (Hybrid) * 10 November 2022 + HCA Bionetworks Seminar: Data Submission Guidelines; Ethics Working Group updates and Q&A * 14-17 November 2022 + HCA Africa Single-Cell RNA-Seq Analysis tools and techniques Workshop * 20-22 November 2022 + HCA Development and Pediatric Meeting 2022 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Paris, France (hybrid) * 06 December 2022 + HCA-wide Town Hall meeting * 09 February 2023 + HCA Bionetworks seminar focused on Atlas Integration and the HCA Cell Annotation Platform * 09 March 2023 + HCA Bionetworks Seminar: Focus on Technology * 27 April 2023 + HCA-wide Town Hall meeting HCA events (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) are open to all, so please feel free to share this information with anyone in your community that may be interested in attending. We hope you will find the content informative and useful. Please send any comments or suggestions for the newsletter to newsletter(a)humancellatlas.org (mailto:newsletter@humancellatlas.org) ** Useful Contacts ------------------------------------------------------------ General Enquires - hca(a)humancellatlas.org (mailto:hca@humancellatlas.org) Meeting Enquiry - meetings(a)humancellatlas.org (mailto:meetings@humancellatlas.org) or asia-meetings(a)humancellatlas.org (mailto:asia-meetings@humancellatlas.org) Ethics Help Desk - ethics-help(a)humancellatlas.org (mailto:ethics-help@humancellatlas.org) DCP Help Desk - data-help(a)humancellatlas.org (mailto:data-help@humancellatlas.org) HCA Executive Office Team - team(a)humancellatlas.org (mailto:team@humancellatlas.org) ============================================================ ** Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** LinkedIn (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Website (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) This email was sent to oral-network(a)humancellatlas.org (mailto:oral-network@humancellatlas.org) why did I get this? (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) unsubscribe from this list (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) update subscription preferences (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Human Cell Atlas . The Sanger Centre . Wellcome Trust Genome Campus . SAFFRON WALDEN, Essex CB10 1SA . United Kingdom

1 year, 6 months

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Invitation to attend the Human Cell Atlas Developmental and Pediatric Cell Atlas Meeting [EXT]

by HCA Events

Thursday 11 August 2022 Dear , We are delighted to invite you to attend the 2022 Human Cell Atlas Development and Pediatric Cell Atlas Meeting, to be held November, 20 - 22, in Sorbonne University International Conference Center (CICSU), Paris, France. This hybrid meeting, with in-person and virtual attendance, will have sessions between 9:00 am - 5:00 pm CET each day. The HCA Developmental and Pediatric Cell Atlas 2022 Meeting will convene our community to share updates and insights on implementing the proposed strategies outlined in the Developmental roadmap. We hope to bring together diverse communities of scientists, computational biologists, clinicians, and ethicists who are interested in forging new collaborations to support this effort. Our ultimate goal is to benefit and improve health, cell and tissue engineering strategies and clinical therapy. We strongly encourage trainees (graduate students, postdoctoral researches) and researchers from LMICs to attend this meeting. If you are from a LMIC and need financial assistance in order to attend the meeting, please indicate this need in your registration application. To register for the meeting click here. Note, we encourage you to register as soon as possible. Registration closes Friday, October 21; however, in-person spaces are limited, so registrations are first-come, first-served. Safety is our top priority for this meeting and we ask that in-person attendees are vaccinated against COVID-19 unless they have an exemption due to a health condition. If you have vaccine access issues, please let HCA staff know. In the coming weeks, HCA staff will follow up with people who registered for in-person meeting attendance for proof of vaccination. We will be following European Centre for Disease Prevention and Control guidelines as well as the recommendations of the HCA Organizing Committee. Information on COVID-19 safety will be available on the HCA and the meeting websites in the coming weeks. Please visit our website or email meetings(a)humancellatlas.org for more information. We will be in touch with additional details soon. Very best, HCA Team Event Website Bizzabo Inc. 31W 27th St, New York, NY 10001 Copyright © 2017 Bizzabo, All rights reserved. For questions or feedback, please contact the organizer. Unsubscribe in order to stop receiving emails from this organizer.

1 year, 8 months

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2nd Human Cell Atlas Latin America Meeting (06-07 October 2022) - registration now open [EXT]

by HCA Events

Dear Researchers, We are delighted to invite you to attend the 2nd Human Cell Atlas Latin America Meeting, held virtually on the 6th and 7th October 2022. Register to attend here. This meeting will bring together Latin American scientists currently exploring single-cell sequencing technologies for broad discussions on applications and bottlenecks to benefit and improve human health. Students and post-doctorate fellows will have the opportunity to present their work, hoping to integrate biologists, computational biologists, and clinicians interested in supporting this effort. We look forward to virtually seeing you at the meeting. Best regards, Enrique Hernandez-Lemus Computational Genomics Division, National Institute of Genomic Medicine, Mexico Center for the Sciences of Complexity, National Autonomous University of Mexico, Mexico Patricia Severino Albert Einstein Research and Education Institute, Hospital Israelita Albert Einstein, Sao Paulo, Brazil Vinícius Maracaja-Coutinho Advanced Center for Chronic Diseases - ACCDiS, Santiago, Chile Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Santiago, Chile Yesid Cuesta-Astroz Instituto Colombiano de Medicina Trópical – Universidad CES Medellín - Colombia Program Committee of the 2nd HCA Latin America Meeting Add to calendar Google / iCal / Outlook / Yahoo Event Website Bizzabo Inc. 31W 27th St, New York, NY 10001 Copyright © 2017 Bizzabo, All rights reserved. For questions or feedback, please contact the organizer. Unsubscribe in order to stop receiving emails from this organizer.

1 year, 8 months

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Human Cell Atlas Newsletter - May 2022 [EXT]

by HCA Executive Offices

Welcome to the eleventh Human Cell Atlas newsletter https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Issue 11: May 2022 ------------------------------------------------------------ https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… Dear HCA Members, Welcome to the eleventh Human Cell Atlas newsletter! We are looking forward to the next HCA General Meeting on June 27-29th 2022! The meeting will focus on integrating communities and atlas building with the Biological Networks, to help map a path towards the first draft of the HCA. We do hope you can join us, either in Vienna or online! The global HCA community has more than 2,300 members from 83 countries working together to create an open, representative Human Cell Atlas. As part of this effort we are delighted to report on the first HCA Africa Symposium, helping to connect researchers and create further opportunities for collaborative HCA science. We’re looking forward to further global events and engagement this year. We hope you will enjoy the news from our community, highlighting the great collaborative spirit and the wonderful science that we do together. Best regards, The Human Cell Atlas Team Table of Contents * Human Cell Atlas General Meeting - June 27-29th, 2022 * Inaugural Human Cell Atlas Africa Symposium Highlights * HCA Website Updates * HCA Data Portals * HCA Data Coordination Platform * Careers in Science: A Panel Discussion * Second European Commission H2020 - HCA Cluster Newsletter * Save the Dates * Upcoming Events * New Member of the HCA Executive Office * Useful Contacts https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** ------------------------------------------------------------ ** Human Cell Atlas General Meeting - June 27-29th, 2022 ------------------------------------------------------------ The next HCA General Meeting, June 27 – 29th 2022, will be held in Vienna, Austria as a hybrid meeting with in-person and virtual attendance. The General Meeting will focus on building draft atlases, integrating across communities, and maximizing impact. Together, we will connect, plan and map a path towards the first draft of the atlas. You can still register for virtual attendance at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** Inaugural Human Cell Atlas Africa Symposium Highlights ------------------------------------------------------------ The first HCA Africa Symposium took place on 20-22nd March 2022 to raise awareness about HCA in the African scientific community and nucleate groups who can benefit from and contribute to HCA at a regional and global level. More than 135 people from 24 countries joined us virtually for the talks and discussions. You can watch recordings at YouTube (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) and Bilibili (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** HCA Website Updates ------------------------------------------------------------ We are continuing to add and update pages on the HCA website. * Equity Working Group: The HCA Equity Working Group page at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… reveals steps taken to increase global representation within the HCA and includes the recent letter to Nature (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) about HCA’s commitment to Humanity (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . * Ethics Working Group: The Ethics Working Group have created some new Ethics Toolkits, which are available at https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… . ** HCA Data Portals ------------------------------------------------------------ The new Data Portals webpage https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… highlights single-cell data analysis portals to facilitate the visualization and analysis of HCA data. Each portal has unique features and utilities. Please add your datasets to all of these portals, and alert us to opportunities to create further HCA-specific data collections. https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ** HCA Data Coordination Platform ------------------------------------------------------------ Please submit your data to the Data Coordination Platform (DCP). This can include raw sequencing data, or raw and annotated cell-by-gene matrices. The data Wrangler team (mailto:wrangler-team@data.humancellatlas.org) are available to help. Submission of managed-access data is also encouraged as matrices can be anonymized even if the raw data is held in managed-access platforms. The DCP team are helping to standardize cell-by-gene matrices so they are accessible by external portals like cellxgene, in order to enable data sharing from live donors. To date, the Data Coordination Platform (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) hosts data from an estimated 26 million cells. Since January 2022, the DCP has added 5.1 million cells; 42 projects (237 total); 800 donors (3,300 total) and 1,600 samples (11,400 total). Please join the new #dcp-users (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Slack channel, to learn when the latest data becomes available in the DCP, and connect with other data users. You can also talk to the DCP team at the HCA General Meeting, please mail data-help(a)humancellatlas.org (mailto:data-help@humancellatlas.org) to connect. ** Careers in Science: A Panel Discussion ------------------------------------------------------------ Nearly four dozen early-career scientists joined us on 24th May 2022 to hear experts on scientific publishing, science policy and science philanthropy discuss their career paths and seek advice on preparing for these and other science careers. The video is available on Youtube - Careers in Science: A Panel Discussion (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . A second panel is being planned for the early fall. ** Second European Commission H2020 - HCA Cluster Newsletter ------------------------------------------------------------ Read the second H2020 – HCA Cluster newsletter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) to get the latest news about the six HCA pilot actions (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) funded by the European Commission Horizon 2020 Research and Innovation Framework Programme (H2020). ** Save the Dates ------------------------------------------------------------ ** Second HCA Latin America Symposium (virtual): 6 - 7 October, 2022 ------------------------------------------------------------ Since the first HCA Latin America Meeting in 2020, the interest in single-cell related technologies has grown exponentially in Latin American countries. The second HCA Latin America Meeting will take place virtually 6-7th October 2022. Jointly organized by a Program Committee from Brazil, Chile, Colombia and Mexico with support from the HCA Executive Office, the meeting will introduce and discuss projects addressing single-cell genomics carried out by Latin American researchers, promoting further collaborations. ** HCA Asia Meeting: 3 - 4 November, 2022 ------------------------------------------------------------ The HCA Asia 2022 Meeting will take place as a hybrid meeting in Bangkok, Thailand. It will bring researchers together to share updates and insights, to broaden representation of communities across the Asia-Pacific region, and to enhance scientific impact in the region and across the globe. ** HCA Developmental and Pediatric Cell Atlas Meeting: 20 - 22 November, 2022 ------------------------------------------------------------ The hybrid meeting will be held in Paris, France, and aims to bring our community of scientists, computational biologists, clinicians, and ethicists together and share updates and insights on implementing the proposed Developmental (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) roadmap strategies. ** Upcoming Events ------------------------------------------------------------ * 09 June 2022 + Biological Network Seminar, featuring the HCA Kidney (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Biological Network. * 23 June 2022 + HUTER training session (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) * 27-29 June 2022 + HCA General Meeting 2022 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) - Vienna, Austria (Hybrid) * 06-07 October 2022 + HCA Latin America Symposium 2022 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) (Virtual) * 03-04 November 2022 + HCA Asia 2022 Meeting (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) - Bangkok, Thailand (Hybrid) * 20-22 November 2022 + HCA Development and Pediatric Meeting 2022 (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) - Paris, France (Hybrid) HCA events (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) are free and open to all, so please feel free to share this information with anyone in your community that may be interested in attending. ** New Member of the HCA Executive Office ------------------------------------------------------------ ** HCA Web Developer - Pedro Martins ------------------------------------------------------------ We are pleased to introduce Pedro Martins who joined the HCA Executive office in April as the HCA Web Developer. Pedro is a front-end web developer who started freelancing in 2010 and since 2016 worked as a full-time developer for a software company in Cambridge – Imagen.io. He is now responsible for the development and maintenance of the HCA public website. We hope you will find the content informative and useful. If you have any suggestions or comments for the newsletter, please send them to newsletter(a)humancellatlas.org (mailto:newsletter@humancellatlas.org) . Join us on Slack, to hear our latest news via the Human Cell Atlas Slack channel (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) . ** Useful Contacts ------------------------------------------------------------ General Enquires - hca(a)humancellatlas.org (mailto:hca@humancellatlas.org) Meeting Enquiry - meetings(a)humancellatlas.org (mailto:meetings@humancellatlas.org) or asia-meetings(a)humancellatlas.org (mailto:asia-meetings@humancellatlas.org) Ethics Help Desk - ethics-help(a)humancellatlas.org (mailto:ethics-help@humancellatlas.org) DCP Help Desk - data-help(a)humancellatlas.org (mailto:data-help@humancellatlas.org) HCA Executive Office Team - team(a)humancellatlas.org (mailto:team@humancellatlas.org) ============================================================ ** Facebook (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Twitter (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) ** Website (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) This email was sent to oral-network(a)humancellatlas.org (mailto:oral-network@humancellatlas.org) why did I get this? (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) unsubscribe from this list (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) update subscription preferences (https://urldefense.proofpoint.com/v2/url?u=https-3A__humancellatlas.us19.li… ) Human Cell Atlas . The Sanger Centre . Wellcome Trust Genome Campus . SAFFRON WALDEN, Essex CB10 1SA . United Kingdom

1 year, 10 months

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Save the Date - Human Cell Atlas Asia 2022 Meeting, November 3 - 4 [EXT]

by HCA Asia Meetings

Dear , We are pleased to announce that the next Human Cell Atlas Asia Meeting will be held on November 3 - 4, 2022 in Bangkok, Thailand. We hope that this will be a hybrid meeting with both in-person and virtual attendance, but the format will ultimately depend on the COVID-19 pandemic situation at the time, and we will keep you posted. Registration will open this summer. In the meantime, please save the date! The HCA Asia 2022 Meeting aims to bring researchers together to share updates and insights, to broaden representation of communities across the Asia-Pacific region, and to enhance scientific impact in the region and across the globe. We hope to meet in-person in order to promote networking opportunities and encourage collaboration between attendees from diverse backgrounds. However, please note that our on-site capacity will be limited. To maximize audience participation and accessibility, all main sessions will be live-streamed on a dedicated event platform. Sessions will also be made available for on-demand viewing on the event platform, for those not able to attend in real-time. Safety is our top priority for this meeting. We will be following the latest pandemic guidelines from the Thai Center of COVID-19 Situation Administration, the Thai Ministry of Foreign Affairs, as well as recommendations from the HCA Organizing Committee regarding both travel (domestic or international) and events. Information on the updated COVID-19 safety measures will be available on the HCA and meeting websites in the coming weeks. Please visit our website or email asia-meetings(a)humancellatlas.org for more information. We will be in touch with additional details soon. Very best, Ponpan Matangkasombut and Varodom Charoensawan on behalf of the HCA Asia 2022 Meeting Program Committee Add to calendar Google / iCal / Outlook / Yahoo Bizzabo Inc. 31W 27th St, New York, NY 10001 Copyright © 2017 Bizzabo, All rights reserved. For questions or feedback, please contact the organizer. Unsubscribe in order to stop receiving emails from this organizer.

1 year, 11 months

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2024

2023

2022

2021

Oral-network