Cv19caingest April 2021

cv19caingest@sanger.ac.uk

6 participants
4 discussions

Blish lab: New single-cell dataset for COVID-19 cell atlas [EXT]

by Aaron James Wilk

Hi there, My name is Aaron Wilk from the Blish lab at Stanford University. Your cell atlas is currently hosting our early COVID-19 scRNA-seq immune profiling work, and I am excited to tell you that we have now posted a preprint expanding that initial work to many more patients across a wider range of disease severity: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.biorxiv.org_conten… Would you be able to host Seurat .rds and .h5ad for this dataset as well? Please let me know if you have any questions. All the best, Aaron Wilk

3 years, 6 months

wrong md5 checksum for https://covid19.cog.sanger.ac.uk/submissions/release1/haniffa21.processed.h5ad [EXT]

by Daniil Sarkisyan

Dear COVID-19 Cell Atlas maintainer, I downloaded haniffa21.processed.h5ad from you website twice as follows $ wget https://covid19.cog.sanger.ac.uk/submissions/release1/haniffa21.processed.h… ) And both times $ md5sum haniffa21.processed.h5ad gave me add2501947c585ea6b6ef7429e4bd9f2 haniffa21.processed.h5ad while you provide md5 checksum 42ad74a77fc289b77cfedb7b287f7e23 Since all other files of COVID-19 PBMC Ncl-Cambridge-UCL release 1.0 matched your md5 checksums perfectly, I suspect you provide wrong checksum for haniffa21.processed.h5ad Best Regards, Daniil Sarkisyan, Bioinformatician Department of Immunology, genetics and pathology, BMC B11:406b mobile: +46 70 885 9883, email: daniil.sarkisyan(a)igp.uu.se När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.se_om-2Duu_datas… E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.se_en_about-2Duu…

3 years, 8 months

Re: your data on covid19cellatlas [EXT]

by Jonah Cool

Hi John, No problem at all and I too am excited to see the data on the covid19atlas, which is an awesome community resource. I'm cc'ing that team here to hopefully help with the modifications that you've pointed out. All good things, Jonah On Tue, Apr 6, 2021 at 11:55 AM Tsang, John (NIH/NIAID) [E] < john.tsang(a)nih.gov> wrote: > Hi Jonah, > > Thanks so much! It has been such a pleasure working with you and Pablo on > this and we are very grateful for your support. Excited that our dataset is > now on the human covid19 atlas site! > > I noticed a couple of minor items that would benefit from small textual > changes if possible: > > 1) title of the dataset -> "Blood PBMCs from COVID-19 patients over time" > would be a better title as most of our patients were not fatal. > > 2) lab name - there are quite a few labs in the Laboratory of Immune > Systems Biology (as it's a department). Easiest to put "Tsang Lab" like the > others would be most consistent. > > Thanks again! > > John. > > > > ------------------------------ > *From:* Jonah Cool <jcool(a)chanzuckerberg.com> > *Sent:* Tuesday, April 6, 2021 2:40 PM > *To:* Tsang, John (NIH/NIAID) [E] <john.tsang(a)nih.gov>; Lau, William > (NIH/NIAID) [E] <lauwill(a)mail.nih.gov> > *Subject:* your data on covid19cellatlas > > John & William, > > Hope all is well and you've been getting lots of positive feedback on the > paper. I wanted to quickly confirm that your data is now available (think > it has been for a few days, actually:)) on the covid19cellatlas site > <https://www.covid19cellatlas.org/index.patient.html> under the "patient" > tab. > > Thanks again for working with us on this and looking forward to connecting > again soon. > > All good things, > > Jonah >

3 years, 8 months

OEM/ODM Manufacturing support [EXT]

by Star Huang

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3 years, 8 months

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Cv19caingest April 2021