Cv19caingest February 2021

cv19caingest@sanger.ac.uk

6 participants
5 discussions

Blish lab: New single-cell dataset for COVID-19 cell atlas [EXT]

by Aaron James Wilk

Hi there, My name is Aaron Wilk from the Blish lab at Stanford University. Your cell atlas is currently hosting our early COVID-19 scRNA-seq immune profiling work, and I am excited to tell you that we have now posted a preprint expanding that initial work to many more patients across a wider range of disease severity: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.biorxiv.org_conten… Would you be able to host Seurat .rds and .h5ad for this dataset as well? Please let me know if you have any questions. All the best, Aaron Wilk

2 years, 10 months

updated dataset for COVID-19 Cell Atlas [EXT]

by Aldinger, Kimberly

Hi, I previously contributed data to the COVID-19 Cell Atlas. I now have an updated/finalized Fetal Cerebellum dataset that I would like to replace for the dataset that is currently hosted: https://www.covid19cellatlas.org/index.healthy.html What is the best way to transfer the updated .rds? Thanks! Kimberly A Aldinger, PhD (she/her) Center for Integrative Brain Research (CIBR) Seattle Children's Research Institute Member, Brotman Baty Institute for Precision Medicine 206-884-1226 OFFICE 206-884-1210 FAX OFFICE Center for Integrative Brain Research, Seattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101 MAIL 1900 9th Avenue, M/S JMB-10, Seattle, WA 98101 WWW https://urldefense.proofpoint.com/v2/url?u=https-3A__www.seattlechildrens.o… CONFIDENTIALITY NOTICE: This e-mail, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message.

3 years, 1 month

Updating Data on COVID19 Cell Atlas [EXT]

by Carly Ziegler

Hi Ni and COVID-19 Cell Atlas Team, I hope you are doing well. I'm writing to request some guidance on updating our group's previous submission to the COVID-19 Cell Atlas Portal (current data and viewer is "Nasal Epithelia": https://urldefense.proofpoint.com/v2/url?u=https-3A__cellxgene.cziscience.c… ) We just submitted our manuscript and are in the process of uploading this manuscript as a preprint to biorxiv. We would love to supply the data link for the expanded and updated object. How would you like us to proceed? I can provide an updated h5ad, though I had some difficulties in formatting this properly before (I generally work in R/Seurat). Thanks in advance! Carly -- Carly G. K. Ziegler Harvard/MIT MD-PhD Program Carly_Ziegler(a)hms.harvard.edu carly.ziegler(a)gmail.com 404-375-8912

3 years, 2 months

The best translation partner you could trust [EXT]

by Yuki Gao

Dear friend, Hope you are doing well! Following on my previous email, as they tend to slip through the cracks, I wanted to see if you’re looking to expand your business globally? We provide Translation and Localization in 200 languages & 20 industries: Data collection and analysis Language translation Llocalization (software / website / mobile app) Interpretation Transcription Voiceover and dubbing Subtitling Transcreation and copywriting Website development / web design / WordPress WPML MTPE Moreover, we are more than happy to offer you a no-cost 500 words of translation and only ask you to move forward with us if you are impressed by our work. Would it be helpful if we schedule 15-20 minutes, to discuss how can we help you to achieve your goals? Thank you so much! Best regards, Yuki

3 years, 2 months

Trouble shooting dataset download [EXT]

by Hicks, Sawyer M

Hello, I am having trouble downloading single cell expression data from your website. After following the download link below, https://covid19.cog.sanger.ac.uk/byrd20_gingiva.processed.h5ad I am brought to a page stating: AccessDeniedcovid19tx0000000000000145d590a-00601c602e-2b1cd989-default2b1cd989-default-default Could you recommend a solution for me? Thank you in advance, Sawyer Hicks Berglund Lab PhD Student

3 years, 2 months

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Cv19caingest February 2021