My name is Aaron Wilk from the Blish lab at Stanford University. Your cell atlas is currently hosting our early COVID-19 scRNA-seq immune profiling work, and I am excited to tell you that we have now posted a preprint expanding that initial work to many more patients across a wider range of disease severity: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.biorxiv.org_conten…
Would you be able to host Seurat .rds and .h5ad for this dataset as well?
Please let me know if you have any questions.
All the best,
I previously contributed data to the COVID-19 Cell Atlas. I now have an updated/finalized Fetal Cerebellum dataset that I would like to replace for the dataset that is currently hosted: https://www.covid19cellatlas.org/index.healthy.html
What is the best way to transfer the updated .rds?
Kimberly A Aldinger, PhD (she/her)
Center for Integrative Brain Research (CIBR)
Seattle Children's Research Institute
Member, Brotman Baty Institute for Precision Medicine
OFFICE Center for Integrative Brain Research, Seattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101
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Hi Ni and COVID-19 Cell Atlas Team,
I hope you are doing well. I'm writing to request some guidance on updating
our group's previous submission to the COVID-19 Cell Atlas Portal (current
data and viewer is "Nasal Epithelia":
We just submitted our manuscript and are in the process of uploading this
manuscript as a preprint to biorxiv. We would love to supply the data link
for the expanded and updated object. How would you like us to proceed? I
can provide an updated h5ad, though I had some difficulties in formatting
this properly before (I generally work in R/Seurat).
Thanks in advance!
Carly G. K. Ziegler
Harvard/MIT MD-PhD Program
Hope you are doing well!
Following on my previous email, as they tend to slip through the cracks,
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I am having trouble downloading single cell expression data from your website. After following the download link below,
I am brought to a page stating:
Could you recommend a solution for me?
Thank you in advance,