February 2021 - Cv19caingest - public-lists.sanger.ac.uk

Blish lab: New single-cell dataset for COVID-19 cell atlas [EXT]
by Aaron James Wilk 02 Jun '21

02 Jun '21

Hi there, My name is Aaron Wilk from the Blish lab at Stanford University. Your cell atlas is currently hosting our early COVID-19 scRNA-seq immune profiling work, and I am excited to tell you that we have now posted a preprint expanding that initial work to many more patients across a wider range of disease severity: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.biorxiv.org_conten… Would you be able to host Seurat .rds and .h5ad for this dataset as well? Please let me know if you have any questions. All the best, Aaron Wilk

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Updating Data on COVID19 Cell Atlas [EXT]
by Carly Ziegler 19 Feb '21

19 Feb '21

Hi Ni and COVID-19 Cell Atlas Team, I hope you are doing well. I'm writing to request some guidance on updating our group's previous submission to the COVID-19 Cell Atlas Portal (current data and viewer is "Nasal Epithelia": https://urldefense.proofpoint.com/v2/url?u=https-3A__cellxgene.cziscience.c… ) We just submitted our manuscript and are in the process of uploading this manuscript as a preprint to biorxiv. We would love to supply the data link for the expanded and updated object. How would you like us to proceed? I can provide an updated h5ad, though I had some difficulties in formatting this properly before (I generally work in R/Seurat). Thanks in advance! Carly -- Carly G. K. Ziegler Harvard/MIT MD-PhD Program Carly_Ziegler(a)hms.harvard.edu carly.ziegler(a)gmail.com 404-375-8912

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The best translation partner you could trust [EXT]
by Yuki Gao 10 Feb '21

10 Feb '21

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