I've downloaded .h5ad file of nasal scRNA-seq published in Vieira Braga et
al (2019) and I really need count-level data for my downstream analysis.
However, I cannot find information on total number of reads mapped to each
cell (which I can find as "n_counts" for majority of other datasets), so I
cannot restore count matrix. Is there any way to get this data too? Thank
you very much, it will really help me to finalize my research.
Researcher, Faculty of Biology and Biotechnology, Higher School of
Economics, Moscow, Russia
I am a lead PI from a group at UNC with Human V3 10x scRNAseq from the oral cavity, specifically from the hard palate/gingiva from 4 healthy human volunteers (2M/2F). It is unfortunate that there are no oral samples available for this Atlas, and I am interested in contributing this unpublished data to the COVID19 Cell Atlas. This work was funded through the industry, so it would not necessarily need to publish if incorporated. Happy to have a zoom call or continue this conversation over email.
Kevin M. Byrd, DDS, PhD
The University of North Carolina at Chapel Hill
Office: 3606 Koury Oral Health Sciences; CB #7455
Research Instructor, Oral & Craniofacial Health Sciences
Resident, Graduate Training Program in Periodontology
Chapel Hill, NC 27599-7525
Cell Phone: 260-249-4724