12 Jan
2021
12 Jan
'21
9:41 a.m.
Hi Ni,
Nice to hear from you, hope you are well. I didn’t know you were at the other end of this
😊
We have the H5AD file for all of the data but Gary just needs to amend some of the
annotation and then we can pass this onto you (sometime today). Would a link to our google
drive be OK for you to pick it up?
We were hoping to add to our manuscript that the data will become available on the
covid-19 cell atlas, hope this is ok?
Many thanks,
Emily
Emily Stephenson
Haniffa Lab
M3.121 Leech Building
Faculty of Medical Sciences
Newcastle University
NE2 4HH
From: Ni Huang <nh3(a)sanger.ac.uk>
Date: Wednesday, 6 January 2021 at 14:48
To: Emily Stephenson <Emily.Stephenson2(a)newcastle.ac.uk>uk>,
"cv19caingest(a)sanger.ac.uk" <cv19caingest(a)sanger.ac.uk>
Cc: M A Haniffa <m.a.haniffa(a)newcastle.ac.uk>uk>, Michael Mather
<Michael.Mather(a)newcastle.ac.uk>uk>, Gary Reynolds
<gary.reynolds(a)newcastle.ac.uk>
Subject: Re: [Cv19caingest] Data Upload [EXT]
⚠ External sender. Take care when opening links or attachments. Do not provide your login
details.
Hi Emily,
Thanks for submitting data to the portal. Take CZI-organised datasets as an example, we
make them fully browsable but not downloadable yet. You could provide the data as an H5AD,
which is most convenient, or we can do the conversion if necessary. There is a guide on
data format
here<https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.google.co…
>. Please let me know of any further questions.
Many thanks,
Ni
From: Emily Stephenson <Emily.Stephenson2(a)newcastle.ac.uk>
Date: Monday, 4 January 2021 at 11:41
To: "cv19caingest(a)sanger.ac.uk" <cv19caingest(a)sanger.ac.uk>
Cc: M A Haniffa <m.a.haniffa(a)newcastle.ac.uk>uk>, Michael Mather
<Michael.Mather(a)newcastle.ac.uk>uk>, Gary Reynolds
<gary.reynolds(a)newcastle.ac.uk>
Subject: [Cv19caingest] Data Upload [EXT]
Good Morning,
If it is possible, we would like to upload our COVID-19 patient data to the COVID-19 Cell
Atlas web portal.
Please let us know how we can begin this process. The data is currently unpublished.
Many thanks and best wishes,
Emily
Emily Stephenson
Haniffa Lab
M3.121 Leech Building
Faculty of Medical Sciences
Newcastle University
NE2 4HH
Happy New Year
-- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity
registered in England with number 1021457 and a company registered in England with number
2742969, whose registered office is 215 Euston Road, London, NW1 2BE.