- Cv19caingest - public-lists.sanger.ac.uk

[Editions Dixit] Votre compte vient d'être modifié [EXT]

by Editions Dixit

3 years

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Thank you for contacting us! [EXT]

by IMG

3 years

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Update to data on COVID-19 Cell Atlas [EXT]

by Carly Ziegler

Hi COVID-19 Atlas Team, We have previously contributed our data to this resource (Nasal epithelia from Shalek Group and Ordovas-Montanes lab). Our manuscript is now accepted in principle and we would like to update the reference with the full dataset. Could you help us with this update? Thanks for your help! Best, Carly -- Carly G. K. Ziegler Harvard/MIT MD-PhD Program Carly_Ziegler(a)hms.harvard.edu carly.ziegler(a)gmail.com 404-375-8912 she/her

3 years, 9 months

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May we expand your translation business all over the world? [EXT]

by Yuki Gao

Dear friend, Good day! This is Yuki who has known you from Google and thought you may need a translation service. We will be the right person who could offer you the best and high-quality services. We are a member of ATA, Proz and TAC (Translators Association of China), ISO 9001:2015. Language Service we offer: Language Translation (over 200 language pairs) Localization (Software / Website / Mobile Apps) Interpretation Transcription Voiceover and Dubbing Subtitling Transcreation and Copywriting Website development / Web design / WordPress WPML Data collection and analysis MTPE Cat tools we use: Trados, SDLX, MemoQ, etc. Free samples are available for new customers. Looking forward to starting the cooperation with your company! Best regards, Yuki

3 years, 10 months

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Blish lab: New single-cell dataset for COVID-19 cell atlas [EXT]

by Aaron James Wilk

Hi there, My name is Aaron Wilk from the Blish lab at Stanford University. Your cell atlas is currently hosting our early COVID-19 scRNA-seq immune profiling work, and I am excited to tell you that we have now posted a preprint expanding that initial work to many more patients across a wider range of disease severity: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.biorxiv.org_conten… Would you be able to host Seurat .rds and .h5ad for this dataset as well? Please let me know if you have any questions. All the best, Aaron Wilk

3 years, 11 months

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wrong md5 checksum for https://covid19.cog.sanger.ac.uk/submissions/release1/haniffa21.processed.h5ad [EXT]

by Daniil Sarkisyan

Dear COVID-19 Cell Atlas maintainer, I downloaded haniffa21.processed.h5ad from you website twice as follows $ wget https://covid19.cog.sanger.ac.uk/submissions/release1/haniffa21.processed.h… ) And both times $ md5sum haniffa21.processed.h5ad gave me add2501947c585ea6b6ef7429e4bd9f2 haniffa21.processed.h5ad while you provide md5 checksum 42ad74a77fc289b77cfedb7b287f7e23 Since all other files of COVID-19 PBMC Ncl-Cambridge-UCL release 1.0 matched your md5 checksums perfectly, I suspect you provide wrong checksum for haniffa21.processed.h5ad Best Regards, Daniil Sarkisyan, Bioinformatician Department of Immunology, genetics and pathology, BMC B11:406b mobile: +46 70 885 9883, email: daniil.sarkisyan(a)igp.uu.se När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.se_om-2Duu_datas… E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.se_en_about-2Duu…

4 years

2
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Re: your data on covid19cellatlas [EXT]

by Jonah Cool

Hi John, No problem at all and I too am excited to see the data on the covid19atlas, which is an awesome community resource. I'm cc'ing that team here to hopefully help with the modifications that you've pointed out. All good things, Jonah On Tue, Apr 6, 2021 at 11:55 AM Tsang, John (NIH/NIAID) [E] < john.tsang(a)nih.gov> wrote: > Hi Jonah, > > Thanks so much! It has been such a pleasure working with you and Pablo on > this and we are very grateful for your support. Excited that our dataset is > now on the human covid19 atlas site! > > I noticed a couple of minor items that would benefit from small textual > changes if possible: > > 1) title of the dataset -> "Blood PBMCs from COVID-19 patients over time" > would be a better title as most of our patients were not fatal. > > 2) lab name - there are quite a few labs in the Laboratory of Immune > Systems Biology (as it's a department). Easiest to put "Tsang Lab" like the > others would be most consistent. > > Thanks again! > > John. > > > > ------------------------------ > *From:* Jonah Cool <jcool(a)chanzuckerberg.com> > *Sent:* Tuesday, April 6, 2021 2:40 PM > *To:* Tsang, John (NIH/NIAID) [E] <john.tsang(a)nih.gov>; Lau, William > (NIH/NIAID) [E] <lauwill(a)mail.nih.gov> > *Subject:* your data on covid19cellatlas > > John & William, > > Hope all is well and you've been getting lots of positive feedback on the > paper. I wanted to quickly confirm that your data is now available (think > it has been for a few days, actually:)) on the covid19cellatlas site > <https://www.covid19cellatlas.org/index.patient.html> under the "patient" > tab. > > Thanks again for working with us on this and looking forward to connecting > again soon. > > All good things, > > Jonah >

4 years

3
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OEM/ODM Manufacturing support [EXT]

by Star Huang

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4 years

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Re: h5 files [EXT]

by Reichenberger, Erin R

Greetings, Thank you for making the data available for download. I have downloaded some data (https://covid19.cog.sanger.ac.uk/submissions/release1/20200804_NasalSwab_Br…), however I have been unable to open it I get errors like this: Warning: Unknown file type: h5ad Warning: 'assay' not set, setting to 'RNA' Creating h5Seurat file for version 3.1.5.9900 Adding X as data Adding X as counts Error: Cannot find feature names in this H5AD file Execution halted Or this: error #001: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dio.c in H5D__read(): line 551: can't read data class: HDF5 major: Dataset minor: Read failed error #002: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dchunk.c in H5D__chunk_read(): line 1875: unable to read raw data chunk class: HDF5 major: Low-level I/O minor: Read failed error #003: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Dchunk.c in H5D__chunk_lock(): line 2905: data pipeline read failed class: HDF5 major: Data filters minor: Filter operation failed error #004: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5Z.c in H5Z_pipeline(): line 1347: required filter 'lzf' is not registered class: HDF5 major: Data filters minor: Read failed There are many message boards that have listed possible solutions, but I have not been able to get any of them to work. Could you provide some guidance as to what programs are used to open/manipulate these files please? Sincerely, Erin

4 years, 1 month

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updated dataset for COVID-19 Cell Atlas [EXT]

by Aldinger, Kimberly

Hi, I previously contributed data to the COVID-19 Cell Atlas. I now have an updated/finalized Fetal Cerebellum dataset that I would like to replace for the dataset that is currently hosted: https://www.covid19cellatlas.org/index.healthy.html What is the best way to transfer the updated .rds? Thanks! Kimberly A Aldinger, PhD (she/her) Center for Integrative Brain Research (CIBR) Seattle Children's Research Institute Member, Brotman Baty Institute for Precision Medicine 206-884-1226 OFFICE 206-884-1210 FAX OFFICE Center for Integrative Brain Research, Seattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101 MAIL 1900 9th Avenue, M/S JMB-10, Seattle, WA 98101 WWW https://urldefense.proofpoint.com/v2/url?u=https-3A__www.seattlechildrens.o… CONFIDENTIALITY NOTICE: This e-mail, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message.

4 years, 2 months

1
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