Dear Kang,
To request access for datasets, please go to:
https://www.sanger.ac.uk/legal/DAA/MasterController
and follow the instructions at the top of the page.
Please note that to avoid delays in handling your data access request, please ensure:
1) You apply using your institutional email address.
2) You list all data users in the application.
3) Your nominated institutional representative is someone who has the authority to sign
agreements on behalf of your organisation. This cannot be a member of your research
team.
Please let me know if you have any further questions.
Kind regards,
Hayley
From: Jin, Kang <Kang.Jin(a)cchmc.org>
Sent: 01 June 2020 22:57
To: datasharing <datasharing(a)sanger.ac.uk>uk>; cv19caingest(a)sanger.ac.uk
Subject: Ask about T cell dataset in the paper [A cellular census of human lungs
identifies novel cell states in health and in asthma] [EXT]
Dear Sir/Madam,
I’m Kang Jin, a PhD student in Biomedical Informatics Department in Cincinnati Children’s
Hospital Medical Center. It’s so exciting to see the Covid19 Cell Atlas
(
https://www.covid19cellatlas.org/) online held by your institute and HCA. Dr. Bruce
Aronow and I are exploring immune cells in human lung and their relations with SARS-COV-2
invasion and inflammation.
The upper airway dataset from Vieira Braga et al
(
https://pubmed.ncbi.nlm.nih.gov/31209336/
[
pubmed.ncbi.nlm.nih.gov]<https://urldefense.proofpoint.com/v2/url?u=http…)
is an awesome dataset which is also available on Covid19 Cell Atlas. I can find the single
cell data for 10X and Drop-seq in the paper. However, the single data of CD4+ T cells in
the Fig.5 (smartSeq) were not available from either GEO or HCA portal. I’m not sure if
it’s available in EGAS00001001755
[
ebi.ac.uk]<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.ebi.…lLcqG_OnWMkf9JOw1CE&e=>.
Could I ask if I can access the data in EGA? If so, what do I need to do to apply for the
data? Thanks so much for your help!
Best regards,
Kang
Kang Jin | PhD student
Biomedical Informatics Graduate Program
Cincinnati Children’s | University of Cincinnati
3333 Burnet Avenue, Cincinnati, OH 45229